Accelerating electrostatic surface potential calculation with multi-scale approximation on graphics processing units

By: Ramu Anandakrishnan, Tom R W Scogland, Andrew T Fenley, John C Gordon, Wu-chun Feng, and Alexey V Onufriev

In: Journal of Molecular Graphics and Modelling, 2010 vol. 28 (8) pp. 904-910

Posted: 01 Jun 2010

Tagged: GPU GEM

My first foray into GPU research, at least in terms of publication. We opened a big can of worms with this paper, asking where some of these anomalies came from, and the future work explaining it never really happened. If nothing else, this paper serves as a reminder that just because we think we know how something works doesn’t mean we always know how it will behave

Abstract:

The latest release of the Green500 List in November 2008 marked its one-year anniversary. As such, this paper aims to provide an analysis and retrospective examination of the Green500 List in order to under- stand how the list has evolved and what trends have emerged. In addition, we present community feedback on the Green500 List, particularly from two Green500 birds-of-a-feather (BoF) sessions at the International Supercomputing Conference in June 2008 and SC 08 in November 2008, respectively.

BibTex:
@article{Anandakrishnan:2010gk,
    author = {Anandakrishnan, Ramu and Scogland, Tom R W and Fenley, Andrew T and Gordon, John C and Feng, Wu-chun and Onufriev, Alexey V},
    title = {{Accelerating electrostatic surface potential calculation with multi-scale approximation on graphics processing units}},
    journal = {Journal of Molecular Graphics and Modelling},
    year = {2010},
    volume = {28},
    number = {8},
    pages = {904--910},
    month = jun
}

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